Halil Kilicoglu: search on Z-Library

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1

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment

Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch

Journal:

Journal of the American Society for Information Science and Technology

Year:

2006

Language:

english

File:

PDF, 376 KB

english, 2006

2

Adapting semantic natural language processing technology to address information overload in influenza epidemic management

Alla Keselman, Graciela Rosemblat, Halil Kilicoglu, Marcelo Fiszman, Honglan Jin, Dongwook Shin, Thomas C. Rindflesch

Journal:

Journal of the American Society for Information Science and Technology

Year:

2010

Language:

english

File:

PDF, 5.71 MB

english, 2010

3

Assigning factuality values to semantic relations extracted from biomedical research literature

Kilicoglu, Halil, Rosemblat, Graciela, Rindflesch, Thomas C., Brusic, Vladimir

Journal:

Year:

2017

Language:

english

File:

PDF, 2.10 MB

english, 2017

4

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

Halil Kilicoglu, Sabine Bergler

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 263 KB

english, 2008

5

Impact of peer review on discussion of study limitations and strength of claims in randomized trial reports: a before and after study

Keserlioglu, Kerem, Kilicoglu, Halil, ter Riet, Gerben

Journal:

Research Integrity and Peer Review

Year:

2019

Language:

english

File:

PDF, 681 KB

english, 2019

6

Informatics Support for Basic Research in Biomedicine

Rindflesch, Thomas C., Blake, Catherine L., Fiszman, Marcelo, Kilicoglu, Halil, Rosemblat, Graciela, Schneider, Jodi, Zeiss, Caroline J.

Journal:

Year:

2017

Language:

english

File:

PDF, 333 KB

english, 2017

7

Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research

Zeiss, Caroline J., Shin, Dongwook, Vander Wyk, Brent, Beck, Amanda P., Zatz, Natalie, Sneiderman, Charles A., Kilicoglu, Halil, Forloni, Gianluigi

Journal:

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

8

Broad-coverage biomedical relation extraction with SemRep

Kilicoglu, Halil, Rosemblat, Graciela, Fiszman, Marcelo, Shin, Dongwook

Journal:

BMC Bioinformatics

Year:

2020

File:

PDF, 686 KB

2020

9

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

Rindflesch, Thomas C., Blake, Catherine L., Cairelli, Michael J., Fiszman, Marcelo, Zeiss, Caroline J., Kilicoglu, Halil

Journal:

Journal of Biomedical Semantics

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

10

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs

Roberts, Kirk, Shooshan, Sonya E., Rodriguez, Laritza, Abhyankar, Swapna, Kilicoglu, Halil, Demner-Fushman, Dina

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 650 KB

english, 2015

11

Expanding vocabularies for complementary and alternative medicine therapies

Scarton, Lou Ann, Wang, Liqin, Kilicoglu, Halil, Jahries, Margaret, Del Fiol, Guilherme

Journal:

International Journal of Medical Informatics

Year:

2019

Language:

english

File:

PDF, 2.55 MB

english, 2019

12

Using semantic predications to uncover drug–drug interactions in clinical data

Zhang, Rui, Cairelli, Michael J., Fiszman, Marcelo, Rosemblat, Graciela, Kilicoglu, Halil, Rindflesch, Thomas C., Pakhomov, Serguei V., Melton, Genevieve B.

Journal:

Journal of Biomedical Informatics

Year:

2014

Language:

english

File:

PDF, 2.46 MB

english, 2014

13

A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources

Deardorff, Ariel, Masterton, Kate, Roberts, Kirk, Kilicoglu, Halil, Demner-Fushman, Dina

Journal:

Journal of the Association for Information Science and Technology

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

14

Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs

Zhang, Rui, Cairelli, Michael J., Fiszman, Marcelo, Kilicoglu, Halil, Rindflesch, Thomas C., Pakhomov, Serguei V., Melton, Genevieve B.

Journal:

Cancer Informatics

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

15

Effects of NSAIDs and hydroxyapatite coating on osseointegration

Salduz, Ahmet, Dikici, Fatih, Kılıçoğlu, Önder Ismet, Balcı, Halil Ibrahim, Akgul, Turgut, Kürkçü, Mehmet, Kurtoğlu, Cem, Tözün, Remzi

Journal:

Journal of Orthopaedic Surgery

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

16

Biomedical text mining for research rigor and integrity: tasks, challenges, directions

Kilicoglu, Halil

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 272 KB

english, 2017

17

Random Forest-Based Landslide Susceptibility Mapping in Coastal Regions of Artvin, Turkey

Akinci, Halil, Kilicoglu, Cem, Dogan, Sedat

Journal:

ISPRS International Journal of Geo-Information

Year:

2020

File:

PDF, 10.33 MB

2020

18

U-Compare bio-event meta-service: compatible BioNLP event extraction services

Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E Hunter, Halil Kilicoglu, Sabine Bergler, Sofie V

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 257 KB

english, 2011

19

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation

Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 612 KB

english, 2009

20

Constructing a semantic predication gold standard from the biomedical literature

Halil Kilicoglu, Graciela Rosemblat, Marcelo Fiszman, Thomas C Rindflesch

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 369 KB

english, 2011

21

Towards a characterization of apparent contradictions in the biomedical literature using context analysis

Rosemblat, Graciela, Fiszman, Marcelo, Shin, Dongwook, Kilicoglu, Halil

Journal:

Journal of Biomedical Informatics

Year:

2019

Language:

english

File:

PDF, 1.05 MB

english, 2019

22

The Impact of the Ligamentous Injury Pattern and Associated Neurovascular Injury on Ultimate Knee Function in Patients with Traumatic Knee Dislocations

Kilicoglu, Onder I., Pehlivanoglu, Tuna, Demirel, Mehmet, Chodza, Mechmet, BalcÄ±, Halil I., AsÄ±k, Mehmet

Journal:

Journal of Knee Surgery

Year:

2020

File:

PDF, 950 KB

2020

23

Biological event composition

Kilicoglu, Halil, Bergler, Sabine

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

24

Menagerie: A text-mining tool to support animal-human translation in neurodegeneration research

Zeiss, Caroline J., Shin, Dongwook, Vander Wyk, Brent, Beck, Amanda P., Zatz, Natalie, Sneiderman, Charles A., Kilicoglu, Halil, Forloni, Gianluigi

Journal:

Year:

2019

File:

PDF, 1.45 MB

2019

25

EFFECTIVE BIO-EVENT EXTRACTION USING TRIGGER WORDS AND SYNTACTIC DEPENDENCIES

Halil Kilicoglu, Sabine Bergler

Journal:

Computational Intelligence

Year:

2011

Language:

english

File:

PDF, 730 KB

english, 2011

26

Semantic annotation of consumer health questions

Kilicoglu, Halil, Ben Abacha, Asma, Mrabet, Yassine, Shooshan, Sonya E., Rodriguez, Laritza, Masterton, Kate, Demner-Fushman, Dina

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.35 MB

english, 2018

27

The geographic distribution of cases of Crimean-Congo hemorrhagic fever: Kastamonu, Turkey

Aker, Servet, Akıncı, Halil, Kılıçoğlu, Cem, Leblebicioglu, Hakan

Journal:

Ticks and Tick-borne Diseases

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

28

Sortal anaphora resolution to enhance relation extraction from biomedical literature

Kilicoglu, Halil, Rosemblat, Graciela, Fiszman, Marcelo, Rindflesch, Thomas C.

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

29

A methodology for extending domain coverage in SemRep

Rosemblat, Graciela, Shin, Dongwook, Kilicoglu, Halil, Sneiderman, Charles, Rindflesch, Thomas C.

Journal:

Journal of Biomedical Informatics

Year:

2013

Language:

english

File:

PDF, 338 KB

english, 2013

30

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease

Marco Masseroli, Halil Kilicoglu, François-Michel Lang, Thomas C Rindflesch

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 639 KB

english, 2006

31

Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence

Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes

Journal:

Journal of the American Medical Informatics Association

Year:

2009

Language:

english

File:

PDF, 336 KB

english, 2009

32

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference

Chen, Guocai, Cairelli, Michael J., Kilicoglu, Halil, Shin, Dongwook, Rindflesch, Thomas C., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.55 MB

english, 2014

33

Automatic recognition of self-acknowledged limitations in clinical research literature

Kilicoglu, Halil, Rosemblat, Graciela, Malički, Mario, ter Riet, Gerben

Journal:

Journal of the American Medical Informatics Association

Year:

2018

Language:

english

File:

PDF, 159 KB

english, 2018

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